PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025229m
Common NameCARUB_v10025229mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 247aa    MW: 27382.9 Da    PI: 4.8236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025229mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1788136354
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Carubv10025229m  88 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 136
                      9*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1187134IPR001471AP2/ERF domain
PROSITE profilePS5103221.73387145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-2987146IPR001471AP2/ERF domain
SMARTSM003802.2E-3587151IPR001471AP2/ERF domain
CDDcd000181.57E-2888146No hitNo description
SuperFamilySSF541711.96E-2188147IPR016177DNA-binding domain
PRINTSPR003674.1E-108899IPR001471AP2/ERF domain
PRINTSPR003674.1E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEYSQSSMYS SPSSWSSSQE SSLLWNESCF FDQSSDPHSF LCPNYDYSDD FFSFESSETM  60
MVKEEIQNSE VSNSEEEEKV GVDEERSYRG VRKRPWGKFA AEIRDSTRNG IRVWLGTFDK  120
AEEAALAYDQ AAFATKGSLA TLNFPVEVVR ESLKKMENVN LQDGGSPVMA LKRKHSLRNR  180
PRGKKRSSSS SSSSSNSSSY SSSSSASSTS RSSTSKQSVV KQESGTLVVF EDLGAEYLEQ  240
LLMSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2786148163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065930.0AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankAY0704430.0AY070443.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankAY0965630.0AY096563.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296079.11e-178hypothetical protein CARUB_v10025229mg
SwissprotQ8VYM01e-134ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLR0G0R71e-178R0G0R7_9BRAS; Uncharacterized protein
STRINGAT2G31230.11e-132(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.13e-81ethylene-responsive element binding factor 15